Google Genomics Cookbook

Welcome to the Google Genomics Cookbook on Read the Docs.

The official Google Genomics documentation can be found at cloud.google.com/genomics. There you will find information such as What is Google Genomics, Google Genomics fundamentals, and details of the Google Genomics API.

Here on Read the Docs, you will find documentation and tutorials for common tasks including moving, transforming, and analyzing genomic data.

• Select Genomic Data to work with
  • Discover Published Data
  • Load Variant Data into Google Genomics
• Process Data on Google Cloud
  • Run workflows and common tasks in parallel
  • Create a Grid Engine cluster on Compute Engine
  • Create a Grid Engine cluster with Preemptible VM workers
  • Run SAMtools to index BAM files in Cloud Storage
  • Compress/Decompress files in Cloud Storage
  • Run Galaxy on Compute Engine
  • Run NCBI BLAST on Compute Engine
  • Run Bioconductor on Compute Engine
  • Run iPython Notebooks on Compute Engine
• Access Genomic Data using...
  • Integrative Genomics Viewer (IGV)
  • Picard and GATK tools
  • Bioconductor
  • Beacon
  • AppEngine (GABrowse)
  • R
  • Python
  • Java
  • Go
• Analyze Data in Google Genomics
  • Analyze Reads
  • Analyze Variants
  • Annotate Variants
  • Perform Quality Control Checks
  • Compute and Analyze Linkage Disequilibrium
  • Advanced BigQuery Topics
• Learn More
  • Read the API reference
  • Migrating from Genomics API v1beta2 to v1
  • Build your own Google Genomics API Client
  • Run through the BioC 2015 Workshop
  • Browse the Google Genomics github repository
  • Subscribe to the mailing list

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Have feedback or corrections? All improvements to these docs are welcome! You can click on the “Edit on GitHub” link at the top right corner of this page or file an issue.

Need more help? Please see https://cloud.google.com/genomics/support.