Illumina Platinum Genomes

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This dataset comprises the 6 member CEPH pedigree 1463. See http://www.illumina.com/platinumgenomes/ for full details.

Google Cloud Platform data locations

• Google Cloud Storage folder gs://genomics-public-data/platinum-genomes
• Google Genomics Dataset ID 3049512673186936334
  • ReadGroupSet IDs
  • Variant Reference Bounds
• Google BigQuery Dataset ID genomics-public-data:platinum_genomes

Beacon

You can find a Global Alliance for Genomics and Health Beacon at http://webdev.dnastack.com/p/beacon/platinum?chromosome=1&coordinate=10177&allele=AC

Provenance

• The source files for this data include:

  • All of the BAM files listed at the EBI FTP site.
  • All of the VCF files were listed at the Illumina FTP site prior to the IlluminaPlatinumGenomes_v6.0 release but they have since been taken down.

• These files were copied to Google Cloud Storage, uploaded to Google Genomics, and the variants were exported to Google BigQuery.

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