The properly rendered version of this document can be found at Read The Docs.
If you are reading this on github, you should instead click here.
Data stored in Google Genomics is accessible via the Google Genomics API. This means that any programming language that can make network requests over HTTPS can be used to access it.
We have examples in github, which can help get you started. The code within each language-specific folder demonstrates the same things:
- Getting the read bases for NA12872 at a specific position
- Getting the variant overlapping that same position, and outputting the genotype
If this is what you are looking for, then take a look at the Java getting started example.