Genome-Wide Association Study (GWAS)

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Google BigQuery can be used to perform a GWAS. Here are several examples:

To run this on your own data:

  1. First, load your data into Google Genomics and export your variants to BigQuery. See Load Genomic Variants for more detail as to how to do this.
  2. For data with non-variant segments (e.g, gVCF or Complete Genomics data), reshape the data into multi-sample variants format via Multi-Sample Variants Format

Have feedback or corrections? All improvements to these docs are welcome! You can click on the “Edit on GitHub” link at the top right corner of this page or file an issue.

Need more help? Please see https://cloud.google.com/genomics/support.